Welcome to the GPAP Documentation

Contents

• Getting started
• Phenotypic Data
  • Submission of phenotypic data
    • New Index Case
    • Import Cases
    • New Family Member
    • Edit Pedigree
    • Assign Participant Permissions
    • Update newly solved cases
    • External Resources
  • Management of phenotypic data
    • Browse GPAP PhenoStore Cases
    • Export GPAP Phenostore Cases
• Experiment Data
  • Data Submission
    • Submit Experiment Metadata
    • Submit File Metadata
    • Upload sequencing files through RedIris server
  • Data Management
    • Experiments
    • Files
    • Statistics on Experiment Access
    • Experiment Analysis Status
    • Experiment QC Metrics
• Genomic Analysis
  • Study setup
    • Case Analysis
    • Cohort Analysis
    • Search Across All
  • Filtering
    • Predefined filter set
    • Variant Filters
    • Gene Filters
  • Variant Dashboard
    • Study Toolbar
    • Analysis and Query Tabs
    • Variant Table Toolbar
    • External Links and Databases
    • Results Table
  • Label and Tag a variant
    • Labeling
    • Tagging
  • Save, share and delete a study
  • CNV/SV analysis
    • Workflow
    • Variant calling tools
    • Annotation
    • Data quality
    • ClinVar
    • Internal Frequency
  • Patient Matchmaking
  • Clinical Report